2011-05-31
HyperMotif now comes
with a user guide that describes the different components of the package
and their usage along with examples.
2011-01-23
The function for calculation
of AUC in NBPreCat is updated. Also, NBPreCat is now able to read the term
hierarchy from an OBO file as an optional alternative to the SQL tables.
2010-11-15
A new program, called
ProMatch, has been added to the package. ProMatch searches for significant
overlaps between motifs found by HyperMotif and patterns that are present
in PROSITE database. The program can be used for cross-referencing the
motifs found by HyperMotif to any dataset, as long as the dataset file
format is similar to the ‘pff’ output format of ps_scan.pl from PROSITE.
2010-11-13
HyperMotif now contains
an automatic algorithm for evaluation of the robustness of motifs. All
motifs that pass the robustness test are significant even after removal of
any one protein from the training dataset. This is crucial in the
leave-one-out cross-validation of NBPreCat.
2010-08-06
The first release of
HyperMotif is now available for download.
