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HyperMotif: hypergeometric-based
analysis of sequence motifs
The software package that can be
downloaded below provides the executable files of the HyperMotif package
and their source codes. The source codes are available under GNU General
Public License.
Windows, Linux, and Mac OS
Download the HyperMotif package from
here:
HyperMotif.zip
(6,775 KB)
Extract the package, copy the appropriate
binary files to the root folder of HyperMotif and it will be ready to use.
The executable programs need to be called from command prompt, or using a
batch file or shell script. An example job has been provided as a Windows
batch file, which uses a set of function-specific short motifs to predict
the molecular functions of Trypanosoma
brucei proteins. See the user guide for more
information.
Example datasets are provided in the
package. Most importantly, a set of function-specific short protein motifs
is provided in data/GO/motifs/GO.MolFunc.motifs.noa. Also, a classifier
file is provided (data/GO/motifs/GO.MolFunc.classifiers.ppv80.tab), which
can be used by NBPreCat to predict molecular functions of uncharacterized
proteins using function-specific short protein motifs. See the user guide for more information.
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